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The application of computational methods to heart research and its associated renal and metabolic systems poses a unique set of challenges and opportunities for biomedical innovation. With the rise of large-scale databases and advanced computing to support healthcare and biotechnology initiatives that accelerate drug discovery and development of therapeutics, investigators with the Krannert Cardiovascular Research Center at Indiana University School of Medicine anticipate cardioinformatics advancements will help inform clinical practice and transform public health within the cardiovascular space. Learn more about cardioinformatics research here.

Research Impact, 2021-2024: Cardioinformatics Research

Horizontal professional headshot of Bohdan Khomtchouk, PhD

Bohdan Khomtchouk, PhD

The application of computational methods to heart research and its associated renal and metabolic systems poses a unique set of challenges and opportunities for biomedical innovation. With the rise of large-scale databases and advanced computing to support healthcare and biotechnology initiatives that accelerate drug discovery and development of therapeutics, investigators with the Krannert Cardiovascular Research Center at Indiana University School of Medicine anticipate cardioinformatics advancements will help inform clinical practice and transform public health within the cardiovascular space.

Cardioinformatics is an interdisciplinary field that applies bioinformatics and computational biology approaches to cardio-(vascular/renal/metabolic) disease data storage, computing and analysis. Formally defined as the nexus of bioinformatics and precision cardiology, cardioinformatics focuses on heart and vascular system research and provides a constellation of data that can inform researchers on both a broad and granular level on intersecting subspecialties related to the cardiovascular system, including endocrinology, nephrology and metabolism.

Bohdan Khomtchouk, PhD, a primary investigator with IU Krannert, is a human geneticist and pioneer in the interdisciplinary field of cardioinformatics, who leads the Cardioinformatics Research Program. Khomtchouk brings a critical skillset to cardiovascular research. His team works toward integrating computational biology and AI/machine learning-based approaches to decipher cardiovascular genomics that will facilitate novel drug target discovery and drug repurposing strategies to treat heart disease. These areas include renal and metabolic co-morbidities, with a focus on addressing genomic health disparities and building new biological databases and biobanks for historically underrepresented populations.

As an assistant professor of Bioinformatics and Data Science at the Luddy School of Informatics, Computing, and Engineering at Indiana University Indianapolis, Khomtchouk’s research focuses on integrating biological database technologies and high performance computing resources to offer data-driven insights into complex biomedical datasets that could someday inform new approaches to clinical care and the development of novel computationally-derived therapeutics.
 
To meet tomorrow’s challenges, Khomtchouk notes that cardiovascular investigators should look beyond traditional research methodologies and include a hybrid of data modalities in bulk tissue and single cell types that encompass protein expression profiles, DNA-methylation profiles, RNA expressional profiles, metabolic and microbiome profiles, and others, as they design their studies.
 
Khomtchouk also serves as the principal investigator of the HeartBioPortal project, the world’s largest human cardiovascular and cerebrovascular disease genetics database. This online platform provides intuitive visualization analysis and downloads large-scale publicly available cardiovascular disease datasets focused on gene expression, genetic association and ancestry information. It is a resource that the greater cardiovascular research community can utilize and query for associations of genetic variants to heart disease, which can be customized upon request. These database resources will help facilitate the integration of data-driven research into IU Krannert’s research studies.

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Author

Angie Antonopoulos

Angie Antonopoulos is a Communications Generalist for the Krannert Cardiovascular Research Center at the Indiana University School of Medicine. Previously she served the Department of Surgery and promoted regenerative medicine research. She has more than a decade of experience in health communications for higher education, advocacy, government and contract research organizations.

The views expressed in this content represent the perspective and opinions of the author and may or may not represent the position of Indiana University School of Medicine.